ChIPSummitDB: a ChIP-seq-based database of human transcription factor binding sites and the topological arrangements of the proteins bound to them.

Czipa E, Schiller M, Nagy T, Kontra L, Steiner L, Koller J, Pálné-Szén O, Barta E.

Database (Oxford).The Journal of Biological Databases and Curation. 2020 Jan 1;2020:baz141. doi: 10.1093/database/baz141. 

Coagulation FXIII-A Protein Expression Defines Three Novel Sub-populations in Pediatric B-Cell Progenitor Acute Lymphoblastic Leukemia Characterized by Distinct Gene Expression Signatures.

Gyurina K, Kárai B, Ujfalusi A, Hevessy Z, Barna G, Jáksó P, Pálfi-Mészáros G, Póliska S, Scholtz B, Kappelmayer J, Zahuczky G, Kiss C.

Front Oncol. 2019 Oct 25;9:1063. doi: 10.3389/fonc.2019.01063. eCollection 2019.

Development of an antibody control system using phage display.

Keresztessy Z, Erdos E, Ozgyin L, Kádas J, Horváth J, Zahuczky G, Balint BL.

J Biotechnol. 2019 Jul 20;300:63-69. doi: 10.1016/j.jbiotec.2019.05.009. Epub 2019 May 23.

Publisher Correction: Dynamic changes to lipid mediators support transitions among macrophage subtypes during muscle regeneration.

Giannakis N, Sansbury BE, Patsalos A, Hays TT, Riley CO, Han X, Spite M, Nagy L.

Nat Immunol. 2019 Jun;20(6):765-767. doi: 10.1038/s41590-019-0401-6.

Gene expression analysis of vascular pathophysiology related to anti-TNF treatment in rheumatoid arthritis.

Póliska S, Besenyei T, Végh E, Hamar A, Pusztai A, Váncsa A, Bodnár N, Szamosi S, Csumita M, Kerekes G, Szabó Z, Nagy Z, Szűcs G, Szántó S, Zahuczky G, Nagy L, Szekanecz Z.

Arthritis Res Ther. 2019 Apr 15;21(1):94. doi: 10.1186/s13075-019-1862-6.

Dynamic changes to lipid mediators support transitions among macrophage subtypes during muscle regeneration.

Giannakis N, Sansbury BE, Patsalos A, Hays TT, Riley CO, Han X, Spite M, Nagy L.

Nat Immunol. 2019 May;20(5):626-636. doi: 10.1038/s41590-019-0356-7. Epub 2019 Apr 1.

Labelled regulatory elements are pervasive features of the macrophage genome and are dynamically utilized by classical and alternative polarization signals.

Horvath A, Daniel B, Szeles L, Cuaranta-Monroy I, Czimmerer Z, Ozgyin L, Steiner L, Kiss M, Simandi Z, Poliska S, Giannakis N, Raineri E, Gut IG, Nagy B, Nagy L.

Nucleic Acids Res. 2019 Apr 8;47(6):2778-2792. doi: 10.1093/nar/gkz118.

Extracellular matrix differences in glioblastoma patients with different prognoses.

Virga J, Szivos L, Hortobágyi T, Chalsaraei MK, Zahuczky G, Steiner L, Tóth J, Reményi-Puskár J, Bognár L, Klekner A.

Oncol Lett. 2019 Jan;17(1):797-806. doi: 10.3892/ol.2018.9649. Epub 2018 Oct 31.

The Expressional Pattern of Invasion-Related Extracellular Matrix Molecules in CNS Tumors.

Virga J, Bognár L, Hortobágyi T, Csősz É, Kalló G, Zahuczki G, Steiner L, Hutóczki G, Reményi-Puskár J, Klekner A.

Cancer Invest. 2018;36(9-10):492-503. doi: 10.1080/07357907.2018.1545855. Epub 2018 Dec 3.

The Transcription Factor STAT6 Mediates Direct Repression of Inflammatory Enhancers and Limits Activation of Alternatively Polarized Macrophages.

Czimmerer Z, Daniel B, Horvath A, Rückerl D, Nagy G, Kiss M, Peloquin M, Budai MM, Cuaranta-Monroy I, Simandi Z, Steiner L, Nagy B Jr, Poliska S, Banko C, Bacso Z, Schulman IG, Sauer S, Deleuze JF, Allen JE, Benko S, Nagy L.

Immunity. 2018 Jan 16;48(1):75-90.e6. doi: 10.1016/j.immuni.2017.12.010.

Dynamic transcriptional control of macrophage miRNA signature via inflammation responsive enhancers revealed using a combination of next generation sequencing-based approaches.

Czimmerer Z, Horvath A, Daniel B, Nagy G, Cuaranta-Monroy I, Kiss M, Kolostyak Z, Poliska S, Steiner L, Giannakis N, Varga T, Nagy L.

Biochim Biophys Acta Gene Regul Mech. 2018 Jan;1861(1):14-28. doi: 10.1016/j.bbagrm.2017.11.003. Epub 2017 Nov 11.

Retinoid X receptor suppresses a metastasis-promoting transcriptional program in myeloid cells via a ligand-insensitive mechanism.

Kiss M, Czimmerer Z, Nagy G, Bieniasz-Krzywiec P, Ehling M, Pap A, Poliska S, Boto P, Tzerpos P, Horvath A, Kolostyak Z, Daniel B, Szatmari I, Mazzone M, Nagy L.

Proc Natl Acad Sci U S A. 2017 Oct 3;114(40):10725-10730. doi: 10.1073/pnas.1700785114. Epub 2017 Sep 18.

Extensive and functional overlap of the STAT6 and RXR cistromes in the active enhancer repertoire of human CD14+ monocyte derived differentiating macrophages.

Czimmerer Z, Nagy ZS, Nagy G, Horvath A, Silye-Cseh T, Kriston A, Jonas D, Sauer S, Steiner L, Daniel B, Deleuze JF, Nagy L.

Mol Cell Endocrinol. 2018 Aug 15;471:63-74. doi: 10.1016/j.mce.2017.07.034. Epub 2017 Jul 31.

Differences in Extracellular Matrix Composition and its Role in Invasion in Primary and Secondary Intracerebral Malignancies.

Virga J, Szemcsák CD, Reményi-Puskár J, Tóth J, Hortobágyi T, Csősz É, Zahuczky G, Szivos L, Bognár L, Klekner A.

Anticancer Res. 2017 Aug;37(8):4119-4126. doi: 10.21873/anticanres.11799.

Tumor Grade versus Expression of Invasion-Related Molecules in Astrocytoma.

Virga J, Bognár L, Hortobágyi T, Zahuczky G, Csősz É, Kalló G, Tóth J, Hutóczki G, Reményi-Puskár J, Steiner L, Klekner A.

Pathol Oncol Res. 2018 Jan;24(1):35-43. doi: 10.1007/s12253-017-0194-6. Epub 2017 Feb 4.

Identification of DNAJA1 as a novel interacting partner and a substrate of human transglutaminase 2.

Ergülen E, Bécsi B, Csomós I, Fésüs L,

Kanchan K.Biochem J. 2016 Nov 1;473(21):3889-3901. doi: 10.1042/BCJ20160440. Epub 2016 Aug 22.

Motif oriented high-resolution analysis of ChIP-seq data reveals the topological order of CTCF and cohesin proteins on DNA.

Nagy G, Czipa E, Steiner L, Nagy T, Pongor S, Nagy L, Barta E.

BMC Genomics. 2016 Aug 15;17(1):637. doi: 10.1186/s12864-016-2940-7.

Effect of Concomitant Radiochemotherapy on Invasion Potential of Glioblastoma.

Hutóczki G, Bognár L, Tóth J, Scholtz B, Zahuczky G, Hanzély Z, Csősz É, Reményi-Puskár J, Kalló G, Hortobágyi T, Klekner A.

Pathol Oncol Res. 2016 Jan;22(1):155-60. doi: 10.1007/s12253-015-9989-5. Epub 2015 Oct 9.

Triamcinolone regulated apopto-phagocytic gene expression patterns in the clearance of dying retinal pigment epithelial cells. A key role of Mertk in the enhanced phagocytosis.

Albert R, Kristóf E, Zahuczky G, Szatmári-Tóth M, Veréb Z, Oláh B, Moe MC, Facskó A, Fésüs L, Petrovski G.

Biochim Biophys Acta. 2015 Feb;1850(2):435-46. doi: 10.1016/j.bbagen.2014.10.026. Epub 2014 Oct 27. Clinical Trial.

Peripheral blood derived gene panels predict response to infliximab in rheumatoid arthritis and Crohn's disease.

Mesko B, Poliska S, Váncsa A, Szekanecz Z, Palatka K, Hollo Z, Horvath A, Steiner L, Zahuczky G, Podani J, Nagy AL.

Genome Med. 2013 Jun 28;5(6):59. doi: 10.1186/gm463. eCollection 2013.